References

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Papers to read for background information

• The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: The putative D-loop and a novel ORF of unknown function

• Blind to morphology: genetics identifies several widespread ecologically common species and few endemics among Indo‐Pacific cauliflower corals (Pocillopora, Scleractinia)

• Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria)

• No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation

• Phylogenomics, Origin, and Diversification of Anthozoans (Phylum Cnidaria)

• Computational Characterization of the mtORF of Pocilloporid Corals: Insights into Protein Structure and Function in Stylophora Lineages from Contrasting Environments

• Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology

• Haplowebs as a graphical tool for delimiting species: a revival of Doyle’s “field for recombination” approach and its application to the coral genus Pocillopora in Clipperton

• Extreme phenotypic polymorphism in the coral genus Pocillopora; micro-morphology corresponds to mitochondrial groups, while colony morphology does not

• New evidence shows that Pocillopora ‘damicornis-like’ corals in Singapore are actually Pocillopora acuta

• Rarity of the “common” coral Pocillopora damicornis in the western Philippine archipelago

• A simple molecular technique for distinguishing species reveals frequent misidentification of Hawaiian corals in the genus Pocillopora

• With eyes wide open: a revision of species within and closely related to the Pocillopora damicornis species complex (Scleractinia; Pocilloporidae) using morphology and genetics

• A genomic glance through the fog of plasticity and diversification in Pocillopora

• Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution

• Genome of the Cauliflower Coral Pocillopora verrucosa

• Switch between Morphospecies of Pocillopora Corals

• Molecular assessment of Pocillopora verrucosa (Scleractinia; Pocilloporidae) distribution along a depth gradient in Ludao, Taiwan

• Niche differences in co-occurring cryptic coral species (Pocillopora spp.)

• Response diversity in corals: hidden differences in bleaching mortality among cryptic Pocillopora species

• Solving the Coral Species Delimitation Conundrum

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Eastern Tropical Pacific coral biodiversity and biogeographic patterns

links being added

• A biogeographic analysis and review of the far eastern Pacific coral reef region

• The Eastern Tropical Pacific coral population connectivity and the role of the Eastern Pacific Barrier

• Coral reef resilience to thermal stress in the Eastern Tropical Pacific

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Coral conservation genetics and restoration references

• A restoration genetics guide for coral reef conservation

• Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic

• A roadmap to integrating resilience into the practice of coral reef restoration

• Translating the 10 golden rules of reforestation for coral reef restoration

• Six priorities to advance the science and practice of coral reef restoration worldwide
  

• Coral reef restoration for coastal protection: Crafting technical and financial solutions

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Conservation genomics reviews and methods references

• Whole-genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations

• Genomics and the challenging translation into conservation practice

• A conservation genomics workflow to guide practical management actions

• Conservation of biodiversity in the genomics era

• The era of reference genomes in conservation genomics

• Combining ultraconserved elements and mtDNA data to uncover lineage diversity in a Mexican highland frog (Sarcohyla; Hylidae)

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Referencias en español

links being added

• Arrecifes coralinos del Pacífico Oriental Tropical: Revisión y perspectivas

• Los ecosistemas marinos del Pacífico sur de Costa Rica: estado del conocimiento y perspectivas de manejo

• Comunidades coralinas y arrecifes del Área de Conservación Guanacaste, Costa Rica

• Distribución potencial bajo escenarios de cambio climático de corales del género Pocillopora (Anthozoa: Scleractinia) en el Pacífico oriental tropical

• Guía práctica para la Restauración de arrecifes | MAR Fund

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Link to Google Drive folder with paper PDFs